Scaffold Ga0181359_1002719

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002719
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5221
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F003748	Metagenome / Metatranscriptome	470	Y
F013755	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100271913	F003748	N/A	MFTVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARSEEYMINGETKKTLRIKNMREVPIAEVDGDDLDPKPF
Ga0181359_10027194	F001259	AGGAGG	MRDCAFIYVNKSNGLVRVESIDTAKHIDGNPEWNHVATINPHVVLESILRATIKDRNQIIKHLLT
Ga0181359_10027196	F013755	AGGAGG	VNDHIPDPTKMISDTPISDSTAHNVGDLGMLCRRLERKLKMLEVVERLSTAQMDYIQQLESENDAMRADLLLWREDKWRE