Scaffold Ga0181359_1002613

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002613
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5283
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Labyrinthulomycetes → Thraustochytrida → Thraustochytriaceae → Hondaea → Hondaea fermentalgiana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014487	Metagenome / Metatranscriptome	262	Y
F029043	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10026132	F029043	N/A	MSRDEQAIKALQYLLDEGFVSLGYIDGQPSVFLTTSVREAQKAILAHIPDGADWWKK
Ga0181359_10026133	F014487	GGAG	MPLLLLALLLCSCSPKGTDKESLTVRYSDMSAAEDAGKTPSVK