Scaffold Ga0181359_1002449

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002449
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5395
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F015702	Metagenome	252	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F033321	Metagenome	177	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100244910	F023834	GGAGG	MSEPTVEYWRAKAELCRDLAVKQIIEGDEKIGKEAGANLMRMVYALSMVDTFREGGRG
Ga0181359_100244912	F026864	AGGAGG	MSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGGGSNWRTALGQALSKIELPTDKEGKENEEV
Ga0181359_100244915	F033321	GAGG	VSRELEVLREEYWRVRANPIFDNPADYCILLDLIIDRIDVLEEGGDGDA
Ga0181359_10024492	F013279	GGAG	MNYDYKCDKCNSELTIERSIYAEVSDPMCFDCHTTMSRVWSSPSVTFKGKGFYSTGG
Ga0181359_10024493	F014590	AGGAGG	VRTKHLSLVTQKHLDIPNKKSDVWSPYGPVRAGLTTSQITPEVRLTELLNSLESAVESLNYKSFVAYDTLNTAMENLRVALSNIVTEEDGTDIL
Ga0181359_10024494	F055450	GGAGG	MTEASNKRLIGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRIQTAGGRGAPATKANIHRTKDEGNEGGEA
Ga0181359_10024496	F068766	AGGAGG	VSEDNVVAFHPKNKLVNFYEIAAEDGNAVWGGEDPHSAVEWLRQSPLNSRLLVSCWEAGEEDARLMIEPIDITKIVFAVMAGTQ
Ga0181359_10024497	F015702	AGGA	MDTLTRERAMIKEIELEYTANNLVKLARKVWGDNADEYLAGRLESVITYNQMKVLIDSLKEEASE