Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1002170 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1002170 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5614
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5614

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (15.38%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100217011	F012871	GGA	MLRSASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFCWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKQINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ
Ga0181359_10021702	F027518	N/A	MNTENEITLIHEQLQGMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLIIKMI
Ga0181359_10021703	F039140	N/A	MKEWFKSLLSNCSKVSSKRIIAIFVVINLIVISYIATFSQYDCPISMFDTLALLTGGLFGGTVIERFANQKTNGGTTQDNSENNS
Ga0181359_10021706	F021113	N/A	MDKREYQPDAVIVIIATSVFWLLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLNAKTTYKRTRDAIVVRDTIVRVDVVRLVNSCDSVIASDSLVIENLQEQINIKDEKTNNLEEVVVAYKQKTVLLSEQINTLDADKKKLEKQKKRRNHALIVTSSVAILSAFVLSILL
Ga0181359_10021708	F019140	N/A	MKQTPLYETLKMTYEREREIVNSIATYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGSMMSKPNEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1002170

Overview

Ecosystem & Geography

Associated Families

Sequences