Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1002060 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5709 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F034068 | Metagenome / Metatranscriptome | 175 | Y |
F047485 | Metagenome | 149 | N |
F055720 | Metagenome / Metatranscriptome | 138 | N |
F067414 | Metagenome | 125 | Y |
F067425 | Metagenome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_100206010 | F067425 | AGGAG | MKLSVELLDNEVKSAVINIGANNGYVEAFIAEDILHVNVFNKEGDVVHDYAITTKDLRAKGGWTAPKFEPTLD |
Ga0181359_100206011 | F055720 | AGGAG | MNTTLILNTNASSCTFTLDVDLRYSSKAFPALSRIQRALDKFLINNSHWLAEDEPRIVALVQSDAKLNVKYASGLSLTKIDPLYV |
Ga0181359_10020606 | F034068 | AGGAG | MQIKAIKREKDIDYERLYQAYEGLIEWIGKNEVDGQETLGLLVKAAMSLAVTNNLPKDDVLEVVAVTYEMERSMRPRADEVH |
Ga0181359_10020608 | F067414 | AGGAG | MTDQERIVYLTAALKNLTLSADRYIDDGSWIEHLTLDVEFAKGVLKSTRLKKESKNESHTMAKT |
Ga0181359_10020609 | F047485 | AGGAGG | MQGLDDHYSALWVANERRLNTPEQTEKYTITIAVEGFVQIDVEATSRSKAVDEAMEIFNDSKINIVVTEKSIADVEKWT |
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