Scaffold Ga0181359_1002060

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002060
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5709
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F047485	Metagenome	149	N
F055720	Metagenome / Metatranscriptome	138	N
F067414	Metagenome	125	Y
F067425	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100206010	F067425	AGGAG	MKLSVELLDNEVKSAVINIGANNGYVEAFIAEDILHVNVFNKEGDVVHDYAITTKDLRAKGGWTAPKFEPTLD
Ga0181359_100206011	F055720	AGGAG	MNTTLILNTNASSCTFTLDVDLRYSSKAFPALSRIQRALDKFLINNSHWLAEDEPRIVALVQSDAKLNVKYASGLSLTKIDPLYV
Ga0181359_10020606	F034068	AGGAG	MQIKAIKREKDIDYERLYQAYEGLIEWIGKNEVDGQETLGLLVKAAMSLAVTNNLPKDDVLEVVAVTYEMERSMRPRADEVH
Ga0181359_10020608	F067414	AGGAG	MTDQERIVYLTAALKNLTLSADRYIDDGSWIEHLTLDVEFAKGVLKSTRLKKESKNESHTMAKT
Ga0181359_10020609	F047485	AGGAGG	MQGLDDHYSALWVANERRLNTPEQTEKYTITIAVEGFVQIDVEATSRSKAVDEAMEIFNDSKINIVVTEKSIADVEKWT