Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1002033 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1002033 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5727
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5727

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100203311	F090097	GGAGG	MTQTSRRIETAKRAAVQYRNYRRARDRALTRLSQAYPETYKELLELEKVNDGTTGAKWVDIDGNNSLVVVIGTRGRERGVIIESASYIAEGEGNSE
Ga0181359_100203312	F041090	AGAAGG	VRNERTERSQENIVQLSAIRREKHRASSPYGPVSQGLTTLQRTDRDLQLTELLNSLESVVADLNSKSYTVLDTLIIAIQAARVALSDTTTKKAGTDI
Ga0181359_100203314	F100350	AGGAG	MIYSFKCQCGSTRDIEQSIHAEIVEPICTDCHQSMSRSWSSPAITFKGPGFYTTDN
Ga0181359_100203316	F004110	GAG	VTELHPIVYELAPSVAYAIHRRYKHWVEKDDITQECIAWAITRNAYITEQMSVEDAKQLEYNQKRIAYQMKRAAERYVRKEKANKSGYQLSDEAYYETLMLGQLLPFVIASVIDGTVLEQAQEMIRDGQPRGSSSPAEGGNLLASLIDIKKAFLELDQKDQIILRMRHHDHATLQQVAQFLECAISTADRRCTHSLRRLQEKLGGETPWR
Ga0181359_10020336	F055552	AGGAGG	MNKEYWERKADLCRKIGIEQLMEGDIKNGNRNLKRMVRALEEINLINANEGEDKSAADMWAELIAAGAMLAGEGESK
Ga0181359_10020339	F040536	AGGAG	MDKIGKVIAFHPVRSGLKLFYEVIEPDGETRWGGERAFDAISWLNLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1002033

Overview

Ecosystem & Geography

Associated Families

Sequences