Scaffold Ga0181359_1001898

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001898
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5863
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F023588	Metagenome	209	N
F024783	Metagenome	204	Y
F036672	Metagenome / Metatranscriptome	169	N
F050982	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100189810	F023588	N/A	MSQPMVLVTWADAHSGVATWTPIDSLDKDEMIVSTCGFLLATCDGGKPDHITIYQSRTQEDDIDHVLHIPVAMVRHMAICTPESLTK
Ga0181359_10018983	F050982	GAGG	MSVPQYFAQVTDGVVTRVAVVTAEFMAENPERYTGTWIETFISVEGKTYAGVGFTWNGTDFVAPVVDPD
Ga0181359_10018985	F036672	AGGA	MKLWGEFHALLWTIAASVTTILTLSGAIQRVVIWLTVGALVLHLIGALNKKEDKS
Ga0181359_10018986	F010236	AGAAG	MKKFQDVAGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAACATVVQKLAQASLDGNLTMDEINDAFGAKKK
Ga0181359_10018988	F024783	N/A	MDWGIVLAALITAVGGAMTTLMMVMRKENTQDHARVVDALDMLSGNVDKIGTKLDSHIDWHLKGTTNGETITRNKVAKPKRNIKAR