Scaffold Ga0181359_1001697

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001697
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6075
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F042328	Metagenome	158	Y
F065775	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100169714	F008073	N/A	MKGIILKHLQKMEFVCGLKQFKEYSQEDGVELLNCLNKLFTSYGWMDEKRVDYILHAGMRGQYGDFYHVNEKNVSVWINQYYAHHQSQIVQEVQAMNQVHREPTEEEIAEWIEIGKQIFRDNYERAKESGFCKDLAEWGGNWFSKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0181359_10016974	F065775	N/A	MAKFQLNFNSAKKVISITLEDEEQGVFDLAYLFKKLLDEAGIPNKLEEKEIEPVEAIQVANEKLD
Ga0181359_10016975	F042328	N/A	MDTKPKIRLGNGKKRSGSWLTAAICISDAEAHAYTYNGKKYVNLNVNIYDAPNEYGKDVAITLNDYKKEENNNPQVNKMPTAPAPYQAEEYDLPF
Ga0181359_10016979	F005529	N/A	MARGLPKSKLDYSLEIRYKESSGKWSAWINKGKGSFQNIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGHPTGEVISLK