Scaffold Ga0181359_1001666

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001666
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6108
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F008690	Metagenome / Metatranscriptome	329	N
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F032255	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10016661	F032255	N/A	MANSQGLAYQFGSPASVTMFDTDNATAVFTALASIESYDLTHEADTEEIRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVAISGAPAIKMMGTADILNTGRFIYAGGGSVKMTQS
Ga0181359_100166611	F009147	N/A	MAVQADISTEYSMGREGFALVTSTAAQTGNWSGLIPVEPTVFTSITGYQISGTWTSKTIPAGLPLVGNITGFQISSGSVVAFLARS
Ga0181359_100166612	F005633	AGG	MRIATTISVDRNDKAKIVAGPEVDASLQRTNFNTATIPEGGKLILWIQGSLAPKIRKG
Ga0181359_100166613	F008690	N/A	LDGGHIARLQFSSASNTFPDSRLELLANGRFGFDVVAENNRWTSAEANTAGFVCGPDAIAIASGLPVGMIAGEFLEQRAVTTANGLSCLLSVWYSRATRSHMASYDIMFGAAAADTTQAEVLVTA
Ga0181359_10016662	F006107	GGA	MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALDAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLFCSATI
Ga0181359_10016663	F005024	GGAG	MTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPVGDINRKSKKTGKRVGTSRILKRLHLIVQARAAKDPTKNFSGGLYGKTMKKAASSFMRKAIGSVGYLRSAVVKSIRIYNRGFSQYSAPKWVPLVKPPGYRAKKKPNAALVAMANQYGLQEENVAIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVSEIYNTAMQKAMDDETTEMINHMTEALLANGKVLEDNGISIK
Ga0181359_10016664	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0181359_10016668	F001272	N/A	MIKIELTQEQANSLLQLIDIAVKAGGVANARAALPLVDLIVAAAQPKSE