Scaffold Ga0181359_1001290

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001290
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6595
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F024095	Metagenome / Metatranscriptome	207	Y
F088525	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100129010	F088525	N/A	MTLQIRQSELNAVGFSGYFPALGYCERKQVAAMTLNRVGRKSDAFLLEINNVNAVRGITYVADTTPLRTVR
Ga0181359_10012905	F014837	AGG	MIERNINPKPRFLTLIASVPSTGAFVGAPLGTLFKTSFFTFPQDSIVHYVSINSTFVANGAASQVIGAVVYNQGQDSIGYNLGVGVDNFGDGTIWRDELLNPAAGVLTADKSTQIMMNEFFCHTGSGIGIYVNGLSGNANINATIAFNPIAEWVNFREPTIGARI
Ga0181359_10012906	F024095	N/A	MDNTNSLPFVYVVTASLGAAVGATVSTTLIMQADSRFELMGIFGTGGTAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIIL
Ga0181359_10012907	F016141	N/A	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALADSAMEKLHSVLNTGILEISFAQKLYYQIARPFIQCPAGFGIDVQALASSRTGNAAETQTNGTNWLARPDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGAQTPAIELGLIFDGYVIRPSQ
Ga0181359_10012908	F014726	N/A	MGFQSESIISAASQRFGVIDYSRWQAIRWQWYSYVTYPSAGSTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLAVNDVDGFTRANQASIDTRALASDYIGGFVQAGVLNFSVGARPFATIIKPFQYAPPPGSPLDLSNTFVNQISAAPNPAAGASAVVGVPWVTQTKMRPNVYFTDPNILIEAEQQFNVKLNFPSGVVPVLATNVVNDSTNPLKVGVILDGLLLRPV