Scaffold Ga0181359_1001288

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001288
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6597
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F030408	Metagenome	185	Y
F035274	Metagenome	172	Y
F056536	Metagenome	137	N
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100128811	F030408	GAG	MLNCPPTHQPMELYIALIADRTGRYAHVWGSAPTWSQFHDQLEDAGCEVIEDQSEYWDGCDQDEIAEDCLSVHQLLNDTTFTPH
Ga0181359_100128814	F035274	N/A	MITIGKDELDNAISLFKIDNYYIECKKNVCYLQWVVTTEQAREYIDAFLECLDVLIDGQWVDTYGLHEQGTYVSLPDQDYIACRYILATI
Ga0181359_100128815	F003687	GGA	MTPKAVEQLLTQDARLLARRDSPVIDKELEEQRQAALEIFFQWQDGMREYQDLMPFCVVLQRKVDLNRDLLRWERRHED
Ga0181359_100128817	F015587	N/A	MTALNIRKNLASILVSTASAVENAKVPTKAGMTEKLNEYRTRAAALIMPKDMAFVITPKTEL
Ga0181359_100128818	F056536	N/A	MICYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIDRYSQTLMGGIPCGTKELLAAMSDYYQDISQLHLDTMAGTIF
Ga0181359_10012883	F001165	N/A	MTDSNLPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMDDDDAMALMPEDLK
Ga0181359_10012884	F007026	N/A	MEQAKKYPTIDWTKREYHQLQLVVDALKAICAREDKRHQMNEHLDPHTRDVIDEVIGMLEDEIDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHR
Ga0181359_10012885	F091979	N/A	MLIAGRFAVGNSPFLKGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPIQNKQAELRMLDQMQRFTPDIRNVVR
Ga0181359_10012887	F019817	N/A	MTTPTINPPVALTINQRNLYTYFLKHRKKYKNTPCYVPRCSTQVSRLDQYLGALIKLELYGLIRVDRSSDNYTAWVMLEPKTRL