Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1001252 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1001252 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	6657
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6657

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F017799	Metagenome	238	N
F024061	Metagenome / Metatranscriptome	207	N
F034845	Metagenome	173	Y
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10012521	F017799	GGAGG	MDTNTNDQRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELRKLIYNPVGDLS
Ga0181359_100125212	F024061	AGGGGG	MNTGEIKNAAVVNNATEQFRSLLETHFIAIARAAEESFVDEENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETESMVDPLQSKLGLVEDAK
Ga0181359_100125214	F016936	GGAGG	MSLELIHAELIRIREALEARPFASGAPAAKPAAPRSDEVPLPTEIIVDAGNVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRAEDVLLRNAARTLIHQKRGTIAGAAVPTAPVANIDEGDVSF
Ga0181359_10012523	F034845	AGGAGG	MTAARTKYWREYNRRNAAKKREQYAAFRERNKEKINAGKRAARAAGKVAPRKVSAIRAAKPTVTKPRTDEGKAEALLTLREKFAAFRAKRAEGRE
Ga0181359_10012528	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFMPVKTIAQALRMSRGTVSERAKRAGMTRHYITEAEARLLFKHRIGGGAK
Ga0181359_10012529	F042326	AGGA	MISDALILVAIFASGGLIGYIIGAARGRKRGRDEQWVECFLAGEKREKLRREKDGRFKSKTKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1001252

Overview

Ecosystem & Geography

Associated Families

Sequences