Scaffold Ga0181359_1001205

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001205
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6742
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003661	Metagenome / Metatranscriptome	474	Y
F011666	Metagenome	288	Y
F033013	Metagenome / Metatranscriptome	178	Y
F038240	Metagenome / Metatranscriptome	166	Y
F056612	Metagenome / Metatranscriptome	137	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100120510	F011666	N/A	MEWHPIERTQESQFSEVATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSG
Ga0181359_100120515	F003661	AGCAG	MDPTTAAAIAIVIAAGSEIIALLPIKENSWVQLIVKALKIIFPKR
Ga0181359_10012052	F033013	N/A	MAIQLTAKASTLKTVMLQIEPDLYARIKAAAKQHNLPAAVAMRQILEQGIEEVEANA
Ga0181359_10012054	F038240	AGGA	MRVQVLLDPEALQLMEREVALRYNSASRVTVSSLANEIIKSHYAILESQDEQL
Ga0181359_10012055	F056612	GAG	MSNFESAFDAKFSLFQVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEAGVNDVPVF
Ga0181359_10012056	F091645	N/A	MDFTALFPEHVEPNCGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPSATKIDIGEGRKIISAPPKT