Scaffold Ga0181359_1000854

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000854
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7449
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038679	Metagenome	165	Y
F060913	Metagenome / Metatranscriptome	132	Y
F078720	Metagenome / Metatranscriptome	116	Y
F093882	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100085412	F078720	AGGAG	VDNKKVVAGVAGIVVVGILSYLGYRVVKELNELEIDFFGENIEDSYYQRYPQKNNDT
Ga0181359_100085416	F093882	GGAG	MTNSDYLTMAENRLDSVQRYYPNSSEFNRLFNIVLDMTNKMTSEELAKHNAKKIETPEAKIERLKEEQRVLEQMAMNKDSNSI
Ga0181359_10008548	F038679	AGGA	MNNTLETIKWLGTICVIIAASCRAFEFHTADLLISIVGAGLWGYASIVMKDKALFVVNAFIVAILIVGVII
Ga0181359_10008549	F060913	AGAAGG	MIKVYQIQLTDLEITIANSGSTSPRLKAYFDRSLESNFKAENFQYYTHVANVDTNDMENAFEAMNLWEESIYFEDVFKLGRCSSMSVGDILESNGQLYRCSSFGFTLLENYQKD