Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000785 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000785 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	7645
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7645

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F023059	Metagenome	211	Y
F025225	Metagenome	202	Y
F049401	Metagenome	146	N
F086801	Metagenome	110	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10007851	F025225	N/A	MLSIDLLNHDKFVVKLQQYKDASRKNMAKVINDKLGDVAVTAIGTTYRSNSAKIASELERIVSSVKNKAIYKPVGISKNGKIIKRKIGVKKKFSSRNESYAGTYKLVNWLLKNRNLPTLGKTKQGVGGLGMGDTAGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAKLTRGDYSKEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEIVMADMAVYLARKNKEASDKIRL
Ga0181359_100078511	F086801	AGTAG	MTGIKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQVKIIYELARLGMEDEDLCATTARDSCKKIFEMMGGIK
Ga0181359_10007854	F093768	N/A	MALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTAEGAVINAVTE
Ga0181359_10007857	F012113	N/A	METILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVLFLSKFSKK
Ga0181359_10007858	F023059	AGAAG	MIEAGIASLAGVVGILFWWLKNRAKTRTERDDAEIEYRRRVRDADLDNWWRHRP
Ga0181359_10007859	F049401	AGG	VTLTLIIGGGIVLSSCASTNYTYTAPSPADIPELIMEWDKLERSLGLVKPEFREQYAKALKALSNAIAEQERWRARAENK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000785

Overview

Ecosystem & Geography

Associated Families

Sequences