Scaffold Ga0181359_1000715

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000715
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7862
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F041777	Metagenome	159	Y
F049635	Metagenome / Metatranscriptome	146	N
F082704	Metagenome	113	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100071510	F091602	N/A	MKSELIFCPNCESKELGERVDEVLRDQQLADWDTAYEHVDDDGEIKVCFDCQEWDDADDDAKGEGWD
Ga0181359_100071512	F049635	N/A	MNKQIYSTPFGRLVKINFKTMKNFKTALRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTILINEEND
Ga0181359_100071518	F041777	N/A	MKKQLLYIAILFAAMLIAGTIDEQTRILEQTPNTTNK
Ga0181359_10007152	F021113	AGG	MNRNILAAILLFFGTSLLWLVLCWNWWGKKDANNTITEVQKQDSIINYNAGEYQMLLEEQLELKEQIAYYENLQSSAKTTYQRTRSAIVIRDTITRVDVIHLVNSCDSVIASDSLVIDNLKEQLNIEARKIDNLQETVVAYEQKEQLLTEEINSLTAEKKKLDKQKKRRNHALIVTSSVAILSTFVLAILL
Ga0181359_10007153	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFYIPESKVKLQEQTST
Ga0181359_10007154	F019140	N/A	MKNTPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGTMMTKNKEDGAEQN
Ga0181359_10007158	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEQESKQLKEKEMAINDDSWRRMFAEDLHNYKKGKYTVIEIRAVSLMRWLEESKQITADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ