Scaffold Ga0181359_1000654

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000654
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8092
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F056552	Metagenome	137	Y
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10006542	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDTEVSGIYLRGDDCLVVHRDGSEQAYNRELIKVAYTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDIGHLVAPDGLRIPNRPIDFDSDMEADQSAPVVDKPWCSCGSYQRQLSNVSDFASEIEGFKPWCIHMTWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHISNGRFVLLYTNSGAQAPLSHWRTYKPKDVFTQHDAWDLFFNMCDVGYVPFPGTALPQLKSAVKK
Ga0181359_10006544	F097198	N/A	MLQFEMGPEEAFWQEKMIRSIKECNSMSELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQVDHDILTRLTNSDPLQ
Ga0181359_10006546	F056552	N/A	MTPTHDQFTLLYEDEHTKLLYEFKALVADDVINHLVDFLKGCGYMESSIFECMKESSEAYFDSLSTQQYVMKWDKPDPE