Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000652 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000652 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	8102
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8102

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100065210	F099303	AGG	MNFIEFTYTKADGTESKRAVLPLVGPTTFVEGIDVSQMPEDEFVVFCRDFSAMKSAQHEQTMAMLEQFDLKHNYRRFIPAQMSDITTDYV
Ga0181359_100065211	F078719	AGG	MEIIEIYLLFALTTGITSCILFLVPAVALAKDMNITNSFTERPWTSYLVYIIITTITAPFSVMPIFIPSFAERFKTGLEKSVMENQI
Ga0181359_100065212	F045760	GGAG	MASSGSKAKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEKIKDALANIKYRRHTPTSKTVWSHGNIRLAKLFKEFTGRASADLFSSNPKVQSAALTYRPDWDKWKAIEGKVNFSLGARAHDSKGNLVWK
Ga0181359_100065213	F038245	AGGA	MKIYFGNANEDLFSDGLFVINDNQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALKEVQRVNEAVKEANRLTERAESRTKGYVYSSWNDDFEVDFDTE
Ga0181359_10006522	F004727	GAG	MKVKITYHDNDSFTMEEVVKQAVHNYGKAAQIEIMPESTMAYDHIYFGLQQLITHEQLSLLYDKDTAYQQDIKKLRESVLYKITEIIDQVIIDNESKVG
Ga0181359_10006529	F070116	N/A	MSKFRTWDSEILADAVKVSLQIRAKIEEMCVATRTSPDGLPNSLIPTDNLYTLVCAYEAAYNALIENDLLKSGNLKTDKNIH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000652

Overview

Ecosystem & Geography

Associated Families

Sequences