Scaffold Ga0181359_1000609

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000609
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8280
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (37.93%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F044916	Metagenome / Metatranscriptome	153	Y
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10006091	F071966	N/A	MSLLGSHIDIQGYILKPFYLLLGALYFIVLLSLLGALYIVLLCKSTLEKVVKDIKKERNKYKRVK
Ga0181359_100060910	F082109	N/A	MWTPIEIFILSFLLNHSPMKSERLSVKEVIENREARLLVESVGLRNDF
Ga0181359_100060911	F048121	N/A	MNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSVK
Ga0181359_100060914	F016774	GAGG	MPPKKPKIEFLSEHLASLNHWRDQLLALEKSYHSKDPEKERTCRNMINKYLDDVLNYNKNIKEKPKNKV
Ga0181359_10006092	F026210	GGAG	MSPILGANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVIDNNGTPWEWYVREEALRFVEDISTKIG
Ga0181359_100060922	F044916	N/A	MGRKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRVFAKTSLEILYKDNPNLFADHAKLKLKKK
Ga0181359_100060923	F064403	GGA	MINPRAKILSDLKKAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0181359_100060925	F032548	N/A	MKHNQEMEKAIKILEELVIQADEDCPHDCRTMHFVNALEQASEFIMEHKNAK
Ga0181359_100060926	F027756	GGAG	MKLKDLIDRKILYINFPMNRHAIQEGKITEISPAEKCIKINNDWHLRDNIRIIELFSEKERPALGFN
Ga0181359_10006094	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKVKSKKK
Ga0181359_10006096	F048101	AGGAG	MTKKMKMKKFKNIKEFLKTCSPDEQEYIYDLYNNASIADLIDLLFEHLPADDTIQEIQEYREEMEWDDNEAEKSNKGKRKCDCDFVGCQGC
Ga0181359_10006099	F062446	AGG	MIFNPVRMIAFILIVIAWILMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY