Scaffold Ga0181359_1000597

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000597
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8343
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F036073	Metagenome / Metatranscriptome	170	Y
F076813	Metagenome / Metatranscriptome	117	Y
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10005972	F102437	AGGAG	MSSKLRPLEDIVLSVREPREIKGSLICAIQDSDIPTLDKRKLIVNIDRCMTIKDIQRLFYNALLKFEGCGVL
Ga0181359_10005974	F036073	AGGAG	MSETIEQTKPYDADLHCKKIAWMVANSPDWDYEKQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEKCYEGEQVNEASQSL
Ga0181359_10005975	F076813	AGGAG	MKHRNHFDQNGDIRDIFAALAMQSLMNLRLQLEDAATPAWIATQAYRYADAMLDVRDEVSHNTTNKETLINE
Ga0181359_10005977	F014710	N/A	MMNTQMEYKTIPTSFKKKGFTYTQLKREGKRAIFQQTRADSALNNYEVVKIGRHNGYIMGGVMIEPSETYPGSSLWGITGWTCTSIDEAMKRYEGLDS