Scaffold Ga0181359_1000539

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000539
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8631
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F004431	Metagenome / Metatranscriptome	438	Y
F021109	Metagenome	220	Y
F051126	Metagenome / Metatranscriptome	144	Y
F056558	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100053917	F021109	AGG	MNTLNRILAEQTVARHEAHEKAIAKSPWIRESVEAYRSADEAQIATVEAIRKKWYGF
Ga0181359_100053918	F004431	AGAAG	MVSKMTITYSLWDGAQLLGAGLTANSADEMNKVVADLQKVSVNVVAHMRKVSQ
Ga0181359_100053920	F056558	AGGAG	MGILDNLENAWDMNDEPELESKPMKEIDNMGREKFWEDMGRPEEPNLAVKIFSETYCSNCSCK
Ga0181359_10005393	F002515	N/A	MKKSKEELRRLMELRRSNAASAVPNKKNYDRKKCQSLMLELKKERGPHD
Ga0181359_10005398	F051126	AGGA	MSARKYSVDNLLVGKYYRSISRHDEGIINYAEKRDAIWYGENLQAYAVRVSPTRGINDFWATVAIETGE