Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1000444 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9137 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (93.75%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F027776 | Metagenome | 193 | Y |
F039985 | Metagenome / Metatranscriptome | 162 | N |
F051705 | Metagenome | 143 | N |
F056414 | Metagenome | 137 | Y |
F079788 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_100044410 | F056414 | AGG | MHFATAVCDAVINCDMMRLSSTNGANMKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPAAFWRESELHQRNFYHEPMSYGSPVPHRSYVQRLVVRRRELDNEQRLIMAQNHYLEQTFQIGVGA |
Ga0181359_100044411 | F027776 | GGTGG | MMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRLDQEMEILRQELKSIQIELDYAKAN |
Ga0181359_100044412 | F079788 | GGAG | MDTDDEIESWATIALGLMASIFFFIGLMAVVAAACMAWGYYTYEPICGSIAALFTQECK |
Ga0181359_100044414 | F051705 | GAGG | MQITATFQDEQEAIKAIHSERAWQTLYEINHVLRSNRKHGLPFEQAVSQIQESVNDALALIPD |
Ga0181359_10004444 | F039985 | AGGA | MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDTVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAAGDNFGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGDDFVEPEPAFPAFSVPVRKAAKPAPAPVMDDEEFF |
⦗Top⦘ |