NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000444

Scaffold Ga0181359_1000444


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000444 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9137
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F039985Metagenome / Metatranscriptome162N
F051705Metagenome143N
F056414Metagenome137Y
F079788Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100044410F056414AGGMHFATAVCDAVINCDMMRLSSTNGANMKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPAAFWRESELHQRNFYHEPMSYGSPVPHRSYVQRLVVRRRELDNEQRLIMAQNHYLEQTFQIGVGA
Ga0181359_100044411F027776GGTGGMMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRLDQEMEILRQELKSIQIELDYAKAN
Ga0181359_100044412F079788GGAGMDTDDEIESWATIALGLMASIFFFIGLMAVVAAACMAWGYYTYEPICGSIAALFTQECK
Ga0181359_100044414F051705GAGGMQITATFQDEQEAIKAIHSERAWQTLYEINHVLRSNRKHGLPFEQAVSQIQESVNDALALIPD
Ga0181359_10004444F039985AGGAMLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDTVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAAGDNFGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGDDFVEPEPAFPAFSVPVRKAAKPAPAPVMDDEEFF
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