Scaffold Ga0181359_1000420

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000420
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9257
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100042010	F034772	N/A	MKKLIDYFTPVTEEHKSFLRHFTSTLMVFIVLCAIFYCLMYFKAL
Ga0181359_100042016	F007860	AGGA	MKTNILAVLYFVFGYITSFSLMVQGTELYINLAGITLFFYLTFSLTDALENLGL
Ga0181359_10004203	F005814	N/A	MELDLLSSRINLNHTCIKLEISLYEIKTKHPNRTDLITSMQSSLKDIRRAMVVYEVLEKEFRVARQMNFNLERLNLEQKQEIQNLKRQIELNNIEL
Ga0181359_10004208	F006463	N/A	MKAGTIYDQLDWWQRQDRGSFDLHLYLEICRIKKNEQIKFKEMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK
Ga0181359_10004209	F009958	N/A	MENRILEIHHREWILNYEFLGWQYQIFGTWEFKDYDEVSEFAFIELDVDVSEKWIIETDDHLQPHIINIRILEDVRLEMQEAINSDLVHYDFWEWKASNDESNYNFYHEL