Scaffold Ga0181359_1000417

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000417
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9263
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (18.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031848	Metagenome / Metatranscriptome	181	N
F081032	Metagenome / Metatranscriptome	114	N
F086647	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100041712	F081032	N/A	MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAISKIGKIATTLTKLFK
Ga0181359_10004177	F031848	AGGA	MSDLFPETGGNLSPRLKWQEEKRIKTLRRADGKWVAFKSETSHSYTDEVELDAVIGLAKKLKLKLWNQ
Ga0181359_10004178	F086647	GGA	MLETQTKMEIEILTPVDAHKSGYLSLTTPYNQENPQDVEWMRTVINDLKGCQIVLVEVIGGLEVARHKSEMILAGQRV