Scaffold Ga0181359_1000391

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000391
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9498
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y
F016268	Metagenome / Metatranscriptome	248	N
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10003911	F016268	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFNTTSIEPTSADQWSAITLASGNPGDNGGACDVTYSEVPVGFNSVTWSPERFALKGPLLCKDDLTYDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNP
Ga0181359_100039110	F010673	N/A	MNPKLIPVLKKLISRDVILQFFKPDNLPQSALAYVRHTYVMCRSLSWEEHDLIESLPPFADHIADSFREGNAPDDSVYHLFDDGSLWLKTNAYSSIWTDARDFAVEILLPRMELSRMDADLLRAIEMDDAVESVLADFYSSFAHILNRDCGIPYCDAREHWNAYARQLSDSACEAVVLGGSESGRKEGIRFASEYTINA
Ga0181359_100039114	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEQENGAKALSIYDENKHICSLIAKDGTQILELIIEREDGDTLCPGTPDLETL
Ga0181359_100039115	F001964	GAG	MSRNLFAKPIYKVQLSGAIGWSDMKEKVVSYQTVEFASRKDAERAARELNPGEYTQGRIRVVPVELSEDYDIYPVAERSKP
Ga0181359_10003918	F086618	N/A	MASIQRIATAVDNLLNGNLTHARKSARGLTYSDIFDWLTGPVGWPEKRSRACADYLIGRIDYRTYCNADR