Scaffold Ga0181359_1000356

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000356
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9855
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F007747	Metagenome / Metatranscriptome	345	Y
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100035611	F002009	N/A	MGDAAADIVWRVMGRGSEKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETAADHLERALVRCLFTLAQIKKEVPRL
Ga0181359_100035613	F058800	N/A	MKLALSWVLYWLGDVISRTILRLGIGYGLYKTLMLWSVDLDDKFDVWKEVKPKRRKRK
Ga0181359_100035614	F007747	AGGAG	MKDLGKITFGKSRPAPKQVLVDVTYDDKTAKALHAFGLKRLKKDQEAVVQYVITKALEGLVKK
Ga0181359_10003562	F025460	AGGAG	MAVIDVPELMNMFRQGDIDKQAAAEAQRKREIEDREMALKEQPDVDFTFEKGGLKVKGKLKDLPALSQDPNFAPYLAGIGSTITNEQSLENEDINSQREAINTRLTKLSQEKLKQELELAKGDTRTGAMELGLGLVGMKPRSDVMKELEAERGVLQGKMAELGFNRQAGQMETNVPDYQSPTMPLQAPTQVAPETPVQAPAQPEAPKNFNSLQEARAAGVKPGQLIYINGKPGRLQARQ
Ga0181359_10003565	F030376	GAG	MKAITTVTLMAMLVASGMADDDDGDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN