NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000221

Scaffold Ga0181359_1000221


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000221 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12006
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017819Metagenome / Metatranscriptome238Y
F038210Metagenome / Metatranscriptome166N
F046910Metagenome / Metatranscriptome150Y
F054562Metagenome139Y
F077027Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10002211F017819N/AQSFCGVQHMRKRSKYRPRPVLQNPLEFVLSGLMPVRDLPGTYLDVQIKNRAALDHLRRGEANKNDIDMLIGAFNITEALALMGKGHDWLDEIKQGQDALLALSQRGVANGMRFIMTAKQWAALQLVMDLHEEQLAHATVHDIEKAHDFVLKALAQGKARAIVEIQKETT
Ga0181359_100022115F046910GGAGVTPSLQDIVKALEPRAMVQIVVITAGGQKYALFGPVMGSGDVTEIEFGELLPMEIAAKMLSGEHRRWLGDRVQ
Ga0181359_100022116F038210N/AMKIDKNIPLPGGVDPRERYPFPDMAIGDSFMILDATWIKNLRSAAYMYSRRHPGTRFTCRRYGEGWRLWRVA
Ga0181359_100022127F054562N/AMSARLCPRLVQLVHLADAGLVRVTWSVIWSEYQVRATSPGGHLVAEYFTDNRADALGTADAMLTELAAAAGVPP
Ga0181359_10002213F077027GAGMNFNLNIHRVKSIRFSATRSSKTNDMFSASRDIVIETEEGDFELTLFSVYVDEDCDEQLLEIRA
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