Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000220 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000220 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	12063
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (59.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12063

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (59.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F030061	Metagenome	186	N
F082594	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100022017	F018353	N/A	MSKPKPKAKKETIELPDVMAQELVKVINTAHQDGKLITGFVCLLETFDGRKKTIRIQANTDMPQHTIFGIINYASEKYEYSITPEEEEDDFYDPNWHDGT
Ga0181359_100022018	F014609	N/A	VINEFVGIIGLLITVLAFIIKVTIEITKMKSQLFPNSGTSLNDKVTRLQIEVSRIATTIDSINTQLGTPPKRKR
Ga0181359_100022022	F082594	AGGGGG	MDYKDVYRVEQALRASISYDLLNRAQDFRNKDDMEEARKIVEQKH
Ga0181359_10002205	F030061	AGTAGG	VPLSTLRANLKTAITSNTNYSAYDHVPEIIIPPAALILASDPYLEPMVIGNTKNYYVRLTLEVVSTTYSNPSALTNLEDDIETILGLIPLTFIVLSVSSPKIRSTNNTDLLCAEIQLQTAYTG
Ga0181359_10002206	F008811	AGG	MATTILSGRSLTLTIATVQYAEQILDSAINFDTERLTFDTLAGKAFKYIDSNVTLDLTFLNDAGKTSPGSLYKALWDATESAPDTALAFVLTLTTGVTLTGNVLPQYPPITASGADAQTCSVSLQVVGIPTEDLTA
Ga0181359_10002207	F008616	AGG	MLKLKIRWELETGEVYEEWTRPNELAQAEKELYNNRSIIKILSEESSPSNQLLLFLGHKIQQRVTKKNESIDTWKPTVTDIAAVDFETANFTKPEASGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000220

Overview

Ecosystem & Geography

Associated Families

Sequences