Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000162 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000162 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	13636
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13636

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (11.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N
F060698	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10001621	F060698	N/A	MEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPINFWIAIIASTILQLGRFAVVFMDFLNPTKGRSPYPPKIALGATIIALIEVFFGLMEKYS
Ga0181359_100016211	F031483	N/A	MNILKGKVKYTAGKVFEGQYGASINAAITLENGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANELPEKVQTPTEGNNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF
Ga0181359_100016212	F014956	AGCAG	MKIQEFALNASITVCPSHIVEPDHLKIWWRKRGVGELEKYFVSGKSIYYNEEIDWKKISNHKKQMWYDSQNFQINMGNEYSKRQG
Ga0181359_100016213	F041648	N/A	MNFLTGKIDTLPNTLTDNALTRYYELRIKYLESEKERLSNEARADYLITLDFWIYAQRMIESYVIFHKESPHEYYYDVLKTILKNLESHNENAFDTSINRLRLEVVTRCNEAIVKCEQITAAR
Ga0181359_100016216	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDEHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRGKMEEEQRQIEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADTYIDFKTQLHRAAEESKKRAVIIAQKLAVWRIVLNKR
Ga0181359_10001624	F010541	N/A	MTKNIYSVMYTGNAKRYQDLNEEVVAYSKRHAVEIVYSKMRNEDYFPDDEFTWGGLIRDCDGNVIADFNDETIEYDGGYFFAEPVMQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000162

Overview

Ecosystem & Geography

Associated Families

Sequences