Scaffold Ga0181359_1000089

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000089
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 17735
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F094883	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100008911	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGFSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGNVWLYDVDQNSVQNLSALVSLQNPSNILDGWMVQAENFVVIQDGQSTPLIFNGSSLRRATTDEIKCGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISNEIVNIADNDQSSLLWSGSAVVFDNRLLMTGQPRYNAQGVIHKALMVLDFNLITSLRKKFPPAWAGIWTGLDVLQVLKTEGVYGDRCFSIARGENGTIQIWEISKGAKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0181359_100008914	F004664	N/A	MSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLHEFVRNHYTANAIQIPSNLDTLITEYACRNGADCSYDEVNVPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRASICSTCSFNRKPLGCTGCNARVLKDAVKTFSQHGSTPMDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET
Ga0181359_10000896	F094883	AGGAGG	MGAILGGAAILGGTSLLGGLLSKGSKPKVPAFKPIDFAAEQKQAIQQNIGSLESATELATKTTAAEQSQLEAQLRRAIPGYDQLIQQAGKNIGSALRGEVSQDVQSQLQRAVAGRAVGGGFKDASGIRTNLLARDFGLTAMQIQNQGLAQAQNFIQQQRTFGMAQPFSISSMFITPGQRIGAMQQQQTAQYNRDMTAAQVAAMPDPTMAAFGSAISSAGGFAGGAYTQRGLMQQMPGRYSSGSYNPQNDPEIYPNLYAPTPTRSDITPLSTSLFPEYGSSNYGR
Ga0181359_10000897	F007361	GGA	MSVLFSLENDCIGLHEQGATDSNWQKSIEDYRNRYKYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECTERFGYEVHLPSVQMLREYADKWAASNSVMTIGEGELFKVDTLRRIWIHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRLVKEVF
Ga0181359_10000899	F005740	N/A	MKLIVQDIRSTIARVIGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGACVGKQLVDRGTVVSYRDMSGGTNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTSSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF