Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000072 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000072 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	19492
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (44.83%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19492

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (44.83%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F014229	Metagenome / Metatranscriptome	264	Y
F024058	Metagenome / Metatranscriptome	207	N
F032162	Metagenome / Metatranscriptome	180	N
F043789	Metagenome / Metatranscriptome	155	Y
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100007226	F009669	N/A	MKTMLSKIFGPNWRSSSSGVVTVVAVCTAIAIHSDPTLVAFLPDKAEVYITGISKLVAVVSGIIFALTVKDAAVTGGTVAQTIEAENRTHGENI
Ga0181359_100007227	F014229	GGAG	MNKLQLIAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPAELQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE
Ga0181359_10000723	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMDTTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANSAVVTFLEGKDKDKVGTINLNNAKLVKENK
Ga0181359_10000724	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFSKYEHKVEVAHHNSMMVNEKQIEEIPCNPS
Ga0181359_10000726	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVKKALTKVALYSLVNKINAKGRKGGLLDLAKAKAQSIVDDMGQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD
Ga0181359_10000727	F043789	N/A	MKKKLSKYEQLIANLNKASQDLKDASTKAIATLDAHANKVEAIHQKAMQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000072

Overview

Ecosystem & Geography

Associated Families

Sequences