NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000072

Scaffold Ga0181359_1000072


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000072 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19492
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (44.83%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F014229Metagenome / Metatranscriptome264Y
F024058Metagenome / Metatranscriptome207N
F032162Metagenome / Metatranscriptome180N
F043789Metagenome / Metatranscriptome155Y
F056412Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100007226F009669N/AMKTMLSKIFGPNWRSSSSGVVTVVAVCTAIAIHSDPTLVAFLPDKAEVYITGISKLVAVVSGIIFALTVKDAAVTGGTVAQTIEAENRTHGENI
Ga0181359_100007227F014229GGAGMNKLQLIAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPAELQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE
Ga0181359_10000723F024058N/AMTHRMINWNFQRKQMRENMRKNMDTTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANSAVVTFLEGKDKDKVGTINLNNAKLVKENK
Ga0181359_10000724F056412N/AMKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFSKYEHKVEVAHHNSMMVNEKQIEEIPCNPS
Ga0181359_10000726F032162AGGMKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVKKALTKVALYSLVNKINAKGRKGGLLDLAKAKAQSIVDDMGQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD
Ga0181359_10000727F043789N/AMKKKLSKYEQLIANLNKASQDLKDASTKAIATLDAHANKVEAIHQKAMQK

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