Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1000059 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 21931 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (79.49%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001097 | Metagenome / Metatranscriptome | 780 | Y |
F001713 | Metagenome | 648 | Y |
F001799 | Metagenome / Metatranscriptome | 632 | Y |
F002487 | Metagenome / Metatranscriptome | 554 | Y |
F007203 | Metagenome / Metatranscriptome | 356 | Y |
F014143 | Metagenome / Metatranscriptome | 265 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_100005913 | F001097 | GGAG | MNFEWPTNDSSRIRTLQGLRSERVDTQIQPKEIDDWLKQSVALVAGSVRGLGTNQRRIRYFGFEKPHDEVTK |
Ga0181359_100005916 | F001713 | AGGA | MKYEFDTTTGEGSVIVTVVMSCERDEEGTYNENIDEVWFEGRNVMGIFTETQFRELEIEGCMRLAKHILEEADEAKIAAYEG |
Ga0181359_100005927 | F007203 | GGA | MYVQMQGVNLAPKVKELEMRLEMLENVVKALQLDKPRMGRPPKDKHGTERTEINPTSRD |
Ga0181359_100005930 | F001799 | GGA | MDKHLLAQWAKNLLNDDFFKEVIDNLKKQQISVIINTSAEESDRREDAYRHIKSIELITGHLEGLASETVIREKKWKIL |
Ga0181359_10000597 | F002487 | N/A | MITRQDAIKDLSHGDYCCYCTEPKTSGSCCGENHFVPFGDLYEEDKEAMIEEYLSEGN |
Ga0181359_10000598 | F014143 | GGAG | MNTHYLTHVRKIFRTYDAPPEVIRSYQKQWVKSVRQLGDKWLVAKPIERIQ |
⦗Top⦘ |