NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181359_1000059

Scaffold Ga0181359_1000059


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000059 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)21931
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001097Metagenome / Metatranscriptome780Y
F001713Metagenome648Y
F001799Metagenome / Metatranscriptome632Y
F002487Metagenome / Metatranscriptome554Y
F007203Metagenome / Metatranscriptome356Y
F014143Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100005913F001097GGAGMNFEWPTNDSSRIRTLQGLRSERVDTQIQPKEIDDWLKQSVALVAGSVRGLGTNQRRIRYFGFEKPHDEVTK
Ga0181359_100005916F001713AGGAMKYEFDTTTGEGSVIVTVVMSCERDEEGTYNENIDEVWFEGRNVMGIFTETQFRELEIEGCMRLAKHILEEADEAKIAAYEG
Ga0181359_100005927F007203GGAMYVQMQGVNLAPKVKELEMRLEMLENVVKALQLDKPRMGRPPKDKHGTERTEINPTSRD
Ga0181359_100005930F001799GGAMDKHLLAQWAKNLLNDDFFKEVIDNLKKQQISVIINTSAEESDRREDAYRHIKSIELITGHLEGLASETVIREKKWKIL
Ga0181359_10000597F002487N/AMITRQDAIKDLSHGDYCCYCTEPKTSGSCCGENHFVPFGDLYEEDKEAMIEEYLSEGN
Ga0181359_10000598F014143GGAGMNTHYLTHVRKIFRTYDAPPEVIRSYQKQWVKSVRQLGDKWLVAKPIERIQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.