Scaffold Ga0181359_1000046

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000046
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 23868
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F014573	Metagenome / Metatranscriptome	262	N
F019965	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100004610	F007860	N/A	MKSNYLASLYFIAGFLTSFFMMFEGQEYYIVFGGVTLFFYLTFSLTEALEDLGL
Ga0181359_100004628	F019965	AGGA	MNDLEIMMQAVQIYIYQMKGVKVRIYLRNIRDINLLKEAYDYIQKNAHNKNTNN
Ga0181359_100004635	F014573	N/A	MHIQDEQLRAELQKILAFKKRNQVVKQIQEKGNKFHFFQLTNFLEAKDVSLSTLKKIDNFVNK
Ga0181359_10000464	F009004	N/A	MKTRNEILDFLFKEQDQENLTANQLHLIIQTLTTFLDDKQLQEIENLFNLFKK