NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000035

Scaffold Ga0181359_1000035


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000035 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)26554
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002286Metagenome574Y
F002653Metagenome539Y
F021488Metagenome218Y
F078246Metagenome116Y
F097207Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100003517F002653AGGAGMSYVHGDFSMTEEELERRVEAMSEEEQHHFRLLIHKLVMCYGEGKAQGVFIIGRAEDQVAGVVTLNCNEMEASQLMLAANDFFGFLNVLGAPPKENFN
Ga0181359_100003521F078246AGGAGMPRPKPPEPITFRNIRMSDRQWIIFNQLGGAEWLRGFLEKKAPMPKKYYDDELTRMQNPADAVFLKQRREEND
Ga0181359_100003523F021488GGAGMSDTIFNKEDFNNIFGKPEMFIRPDPLVRNAVLEEVALEFDAMRIAFGDTADSFARYVREMKS
Ga0181359_100003525F097207AGGAMPDMQTALSNALKTTINDWEKDDMQTTQTNTQGKKFFGVTNNVTRATFEYVKNNPNETSPEICAGMEKLGYKPSSVSSLIAQFAVQGLAERDDRGRYITIVPEYRPLKAKKKTLTLVSKPEEIKPKRKYEKRAVTGIGALLREKLENTPMPSQDALDAAAYAMGGSVNKRFTSLVRTKSPEDILKDMTVFQARELYDYLKKMFGG
Ga0181359_10000357F002286N/AMAYSQKVIDAVMAAKKTPGNQLGRWAIYLDFPVTKIAYALGVTRQTVYNWFEGKDVFVAYQNRVELLLEIMKSSTDAQQAWRKICKEYNLEP
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