NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000034

Scaffold Ga0181359_1000034


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000034 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)26625
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (87.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022833Metagenome212Y
F044986Metagenome / Metatranscriptome153N
F048157Metagenome148N
F049485Metagenome146N
F061649Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100003415F022833GAGGMATKLQSNLVTKLQEIRQLKDTIQDLNEQLQEVKEESNNLELALNKCIYSKAELNDKNEQLQDDLRQFMELYASTKVVAQNLSEAIYFLTKDKQHG
Ga0181359_100003418F061649GGAGMRDQTDCHYPQESLCLRGCEDGCRARKTVWRKRTIQEMEDQELEDEEFRKIPQFTYECKHLGVCMDRPSHCPDCPSNHA
Ga0181359_100003438F044986AGGAGMSLSSNKIILSGTSTNAAGAYYLTYAAGNATVTLPAGIYVIPPTANVTIELNTNGTGNISNASYQVIVANNTGGTFIADGTNVRANVLSGTPTITLFSTNGGQAVGSTYTS
Ga0181359_100003449F048157AGGAMVTTAQAAPPPASKMPDVGVLDTIKKTRGEDESKTMNALQVVQTSMANQLPPGVTMDTFLRKLATALQNPNNKLVQIGNSAFILTLIGDGVVQFHTFSAEQPQKLLKNYLGLAKLLKNQGIKKATTYSDRPEFVDLAKKSGLPVKVGQSQKMMG
Ga0181359_10000349F049485AGGAMENQKKPPFVPQEMKGRMTKNTYKKQGSSEPDWKGTFMYKGETITFGAWENDAGYGVYYNIKLNDPNWNKQQQQYPKEVQAKSYPKDSDVPF
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