Scaffold Ga0181359_1000031

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000031
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 27521
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (82.98%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F016784	Metagenome / Metatranscriptome	244	Y
F023834	Metagenome	208	Y
F027417	Metagenome	194	Y
F082391	Metagenome / Metatranscriptome	113	Y
F093487	Metagenome / Metatranscriptome	106	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100003123	F023834	AGGAGG	MNKEYWQAKADLCRDLALIQIQEEETEKEAGMNLMRMTYALSMVDTYTEGKGE
Ga0181359_100003125	F093528	AGGAG	MSEDTTTHVITVVVQAGQKSNKVELFDFSGDEPTLLAAGEASNWRTALGEALSKISLSSDTPEKTINDIVKENIEGEGE
Ga0181359_100003126	F027417	GGAGG	MNYDYRVTFVTDYLTITTNVCLELDDTIGNLSDEAYEQATINGMNNIEDEIGKIDETVINDITVTLLLDDEEIELGSFGEFPPVHVSVVEGEGESE
Ga0181359_100003128	F095162	AGTAGG	MSDAKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKVSDEQEGKTWIDINGNTIEPVIPTRTKTRGATLTETNTNEGNNGGEE
Ga0181359_100003131	F013279	AGGCGG	MQYDYRCPDCNGEMTIERSIHEDPREPSCFHCHIPMIRKWDTPAITFKGKGFYSNGG
Ga0181359_100003136	F093487	N/A	MDKGEAVMAVAIKPLRHRRRTAQRGKSLSQSQRWGKVVTIMPVPGGEITTTEILVPVVEEVVEEVEDDLPELS
Ga0181359_100003142	F016784	GGA	MEFNTFDYVEPEFKDVIATSEYAAHYWFEQGWKACRLAFLLHKQAEETGAFRV
Ga0181359_10000318	F082391	GGAGG	VDNNNKVPRSVHFADFLVVLAGFVHNVASSVQTATEELMEIAVYNANRNSEVNKAWEQFSNDLEKIQEDTDGR