Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000019 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000019 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	32534
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (20.41%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

32534

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (20.41%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F039478	Metagenome / Metatranscriptome	163	Y
F050171	Metagenome / Metatranscriptome	145	Y
F071967	Metagenome / Metatranscriptome	121	Y
F083776	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100001927	F017268	N/A	VNLDITLIFNLVMGAASFLGGWLFTRLFSLFDKQENLMKEINDKTFSDFITLRKEMEVEGRKHQQEIADLALKISTTYVTKESFETYFDRIEAKLDRNFDTIQNLLLKNKDK
Ga0181359_100001934	F071967	AGG	MSDQTQALAICSEFADEYGFDSKDLETLVVYTKSEYINELKNLLSVKNFKLKSFQIYGDEALIYFVPKKRKKI
Ga0181359_100001936	F039478	N/A	MLKKILSFIDCTMPAKSKLDLYLGTLYKIKGEALPFRYIRFTNQAYSNKPVYHFKHHQLKEYKFNDLSKVEREANPEEVRIYNLIKNHVNEVAENND
Ga0181359_100001945	F050171	AGGA	MGMFNYIKIEQDLPLNDELKALNVDFKKEEFQTKELEESLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLTEISLITPVEKNSSGKRIDAEESFMKEIEDHERKMRCPVYSFYFKYYVKTMNLVEWKLSIGIVKIINFLNWLQWKGIRKVIRILTPR
Ga0181359_10000198	F083776	N/A	MIVSDRDIDFFAKKLNLSPEKTFLLIQDPECLPEILNKISEDNIDGIIDISFPVFAEITIIKYSKDLKYSFEEKEYVSEAVGLKFYDLIGEPIVKKSIFEFKHDEDTAKSLLVFLGFFYKNLNRPRRAYPSENTYYNIAKNGFENSDKIHISEHLKDWIKVLRIIHNEVWF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences