Scaffold Ga0181359_1000014

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000014
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 38494
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F026858	Metagenome / Metatranscriptome	196	Y
F041080	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100001426	F001094	AGGAG	MNKKLEAILATYLRAAVASVLALYLSGVTDPKSLLMAGIAAVAGPVLKALDPKETAFGRGSGKAMQVK
Ga0181359_100001436	F008808	N/A	MKNDMKKCPQCGELFENVFEAIDHLLEEDEDFDPALILPNGYRLMIGSLLKCLYKYSNEPEKIEEITESTYLTLFTAETNPLQIMNVVEDMIVDSSMIGIDDELRHLLGNGE
Ga0181359_100001438	F001515	N/A	MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECYFKKIEAWAPSGLMVTEAAYWAFVLEESTLIVPIDALKYAVKEFGREIECNIPPNLSKGKLITVDDLMSATRLYKKAKADELATH
Ga0181359_100001439	F001531	AGG	MNWQRIEPWDYVVVAVASEYHRKYAMVELEDIKQSLYEWFIEHPNKLDEWEAIGKRDAKNLIYRSLRNQALDYCQKWKAKSVGYEVSDLFYYAPEVVEAMLPAVLRHDLTITPQLNLGGSSTPTAPSEGGNLMAMMIEIDWGYWKLSKDDRRIIFLRHAESMDYKEISNTLSLGSEDAARMRTKRALNRLISKIGGHKPYRDEDSTPAGKEVEPAEAESLEEGDEHNNTDE
Ga0181359_100001449	F041080	GAGG	MSTTQTILGLADELRIIADEISYNAFDSSSDFPKRGTIVKATASQTRFKPKSMWVSLGNGTYKHLTGSKGLVTTHERLDGYTEVVFEA
Ga0181359_100001452	F026858	GAGG	MTHDNLLLNLTQREVEVIRMALRVQEDTHKRNDFPSLVLEVQDLRSKIADMIIDNARELTKA