Scaffold Ga0181361_101733

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_101733
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1565
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F014952	Metagenome / Metatranscriptome	258	Y
F036206	Metagenome / Metatranscriptome	170	Y
F056310	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1017333	F036206	AGGAG	MEMIPKVKTTKVQGQIGTGITQNKMCVPGEFTPGKLPAGGFQAVWNFKNNVPNDYFTRKESPTSGGGGKVY
Ga0181361_1017334	F014952	GGA	MANNIPFQIQGKTTRINVTTAANTVSILADSPCNQLRIHNGTAAEVFIRVGTESTDAAVIPVAGTPAYGAVLHNNQTIIITSPKQAANTAANSVYVSAIAPTGTAIVYVTPGEGMA
Ga0181361_1017335	F000273	AGG	MSEEKIQAMESKSALVEKITFALLPLLFSCVVYLMSALSNLSHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQKNRDDIHVNRLHIAILEDRAGMKTTFKKEDK
Ga0181361_1017336	F056310	AGAAG	MTLYIPLLYICIGLECAFFQSEIYTLDEKKCEQEITQQKSELIKLGRTVQAICVDIKIQLEKKSDVTYRSFPSW