Scaffold Ga0181361_101206

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_101206
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1772
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017817	Metagenome / Metatranscriptome	238	N
F036206	Metagenome / Metatranscriptome	170	Y
F044358	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1012063	F017817	N/A	MSKKAKGINPELEKALNELLKQVMADPTATITDKMRVADRALKLEALKLKDSDAEWGAGFMDVDDDEDK
Ga0181361_1012065	F036206	AGGAG	MDMIPKVKSVSKMAHVGTGIIQNKLCVPGEFTPGKLPAGGFQAVWNFKNNQPNDYFTRKESPTSGGGKKVY
Ga0181361_1012066	F044358	AGAAGG	MANNIAFQVQGKTTRINVTTAANTVAILSDSPANQLRIHNGTAGEVFIRIGTGSTDDAVIPV