Scaffold Ga0181361_101042

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_101042
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1861
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F065471	Metagenome	127	N
F079679	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1010421	F079679	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCIKHNINISDFKLLSPHEHFINAVKLQWPSDVSIYNRGYTNNQLLRTLEELCNNTDICLAGAASMGKSFPVGLWIYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCAAVQIGKLIDYRHMIVWGGGSNDEDRDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMS
Ga0181361_1010422	F021128	AGG	MKLKNKNLAPVGGWYFKYEIKRDKLTFPAIVYGSTMNSLMQNIRKDYTSNGIEVPTDIEQIVEDQVCQRQPSNRCWYSDGIGDKIAQAIHTVAAATDKVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0181361_1010423	F065471	N/A	MLSIGQDNFSLATLDQDGKPPETRISNASHAWNIANNLRLANTGRENKRLRIYKAYKMFPPTGYSKLAEKRLPWQSDVNYGQLGFIVDNQKSSYYDVITERQACCTIKSKFGNEKERLVNSENISTAFDQALREWPGYLYNTEQDLEEMLLYGKGIGMWDSPMGWMPEHVFLSDLLFPDDIRIDFCNLEEFVRRVRLTPYELYKKIENRAAAEAMGWNVDAAIDAIRFHRAFTNHRKTREDFFRTISESGFI