Scaffold Ga0181361_100661

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_100661
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2147
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022872	Metagenome	212	Y
F083794	Metagenome	112	N
F100544	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1006611	F100544	N/A	IDDDVALHYASPATGGFSGGFPFFIPIPRRLTGQDTISLRIVNAAASQNVDVTVWYRNEL
Ga0181361_1006612	F022872	N/A	MSWQIPQQIELDIIAGKAVAFAVVFGYDFSPAGGGFTIYNNLFTPTPRIVPDQLRFFETQQISFYTGTDFYPFVHHINTNSSAYFDTINSVPSVVHEIDNTPIARQVYITSPKDITITVGLILTIDPATTGAIPITNRTPALLTYGGSPQTPNVQTDFGPALTPIQFMQPSPNDFQAFGFGLLPNNANGQAFATPDATRGLLDPSVHLNSFGATFSEAAAANYFLCLHYALYTKTIPEQR
Ga0181361_1006613	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGSTIIPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGSTSKATQIVIDKGEPAPATAVLNSAPSRGISDHNSESVLSYRAALDMQNQIATLTSENNRLRDLVEALEGDLADIEEAQPQQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYDSL