Scaffold Ga0181361_100144

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_100144
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3240
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005775	Metagenome	390	N
F016114	Metagenome / Metatranscriptome	249	Y
F025444	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1001441	F016114	N/A	DSRDIETINEMAAMARRMLISQRQLQRDELLRLKMKYPLLTTKD
Ga0181361_1001443	F005775	N/A	MKKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMASGSVTRYVPKSDHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNAGKLDQVVTKELDTYQTYHLKNLLNTNEQP
Ga0181361_1001445	F025444	N/A	MYLQLAGLEPLDTALNPLAPGAPTYKYKNYYLGQGQDIILPDALFPANVEGYAEALKSLTSLYDKYAKGALTPADKVKNKGLSVIDPATLKLIATVVYQGIQAASVVFRGQVVTAARQRITELYNGNNFNVQNLNKLTGRQISDQITAIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGIGNLPGWVLPAALGLGAFLLLRGRK