Scaffold Ga0181361_100067

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_100067
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3906
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003659	Metagenome / Metatranscriptome	474	Y
F011474	Metagenome / Metatranscriptome	290	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1000671	F051646	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYAVIFGYDFSPAGGGIQQKTERQALLELSPESIRFFETQQISFYTGIDFFPFIHHVNSEISAFYSDDSANPEYYNTIDNSPIARQVYITSPNDITITHGLILNATPATTGTIPVTNRTPGFLTYGGSPQLIQAQTNYGPNATPLQFMQPSPKDFQDFGLGLLPNNADNQAFATPDVTNGLLEANAHLLAIGGDTFVTAAAANYYLCLHYAIYSKTIPEQRG
Ga0181361_1000673	F011474	N/A	MKEKIDHLTHFDIVVKEELASCGSAEDMLHVLAKNYDLHKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS
Ga0181361_1000676	F003659	N/A	MNADDAIGRYLIAREDVPVYNYPNGTRIGTINKGNSTAEVYSYVRRPGQVWFMFDYTIPGTTPGAYYVLAKDGRFSLSTAAGNVIVSPASLPSVDVFPAGSQLKKYAIFGVLGLLALLILKK