Scaffold Ga0181361_100038

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_100038
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4893
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F010159	Metagenome / Metatranscriptome	307	Y
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1000382	F070805	N/A	MYLQLAGHTPLHNAENPLAPGAPTYSYDKFYLGEGQDIILPDALYKTSPGGFVDALKKLKKLYEDFQDGKKPTPAVVAARAATAAKPTTGVQRASTIQPMNGVGAVIALLSQAIPFIVSILGTISATLVNNNITNKYSQNAYNVQQLNNMSIADLNLQIQRLDQDIAASGGILKIINLMALSQFRMVYQQRFDRISVGGFLTNVPGWVLPAALGLGAILLLRGRK
Ga0181361_1000385	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSITTAATNFTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFQPTDATGANYNGLATSGFSVKFDLVIGNKTVLKDVACELGGEQAFYNDAGVLSAVIDLEGVGILIPPQVEYYVVAKTYVTDTRVAFSTRCGCYLFGTGALLNFNTTI
Ga0181361_1000386	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAVAGQTFYQFFTNFAGKTEFQTNLTTNKLDSGESMVIKSVQIILGSATSTLNPHLNLNITVGNQVVLKDFDPSFNASSRGLAYDRLHGANSGSNLEFRLLTEIVIPPQVNFKAELQMSDLLIAVNDDVTIVFKGYGRIFSAGNSF
Ga0181361_1000387	F000710	AGGA	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATLVNALQLRVTLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0181361_1000388	F010159	N/A	MSFQIPTQIEQDIIAGKAKYQTFQTGNGGQSILPVPPNSYAVIFGYDLSPAGGGFKRFSTILATENQSINDNVIRYFETQQLSFYTGTDFFPFIHHVDVKTTLAPLTIDATIPNANEVTRYKFCEEIDTTPIARQVYITSNNDVTITYGLILESPRIVGNAIPVTNRTPFGLTYGGAAQTLNTQTNYGPGGTPQQFMQPSPKDFQDFAFGLLPGNADNQAFATPDLTNGLADVNQVILSFTGSTAIRDTAASQYYLCLHYALYNKTIPEQRG