Scaffold Ga0181361_100012

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_100012
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9318
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F004838	Metagenome / Metatranscriptome	421	Y
F005775	Metagenome	390	N
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F016114	Metagenome / Metatranscriptome	249	Y
F025444	Metagenome	201	N
F026828	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_10001210	F011474	N/A	MKEKIDHLTHFDIVVKEELAICTSAEDMLIVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNANANYKTKELKDTRFPHLKIFS
Ga0181361_10001214	F003659	N/A	MTAADVIGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSFLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSSVPGNVVIAPNVLPSVDVFPAGGIKKYAIFGALGLLALLILK
Ga0181361_10001217	F026828	N/A	MITEELITSAIAFLAGWILKRPDFVQKIISKIFTKK
Ga0181361_10001219	F008615	N/A	MNTPDTFGAKMFNRFMRKGWHISFTCSYQDRVCVIPPERLDAQHLFGIYIPVMRHTWQPDLKREWYAALWSKKEKTMHGPTFEASAHPDDIERFAAFASWIGDLLRNPEKFT
Ga0181361_1000122	F025444	N/A	MYLQLAGLEPLDTALNPLAPGAPTYKYDAMYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFGKGKKTPSAVVKTPGMGVDPATLMLIAKGIYAGVQALSVVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQLSDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLILRGRK
Ga0181361_10001220	F016114	N/A	MHTKYWAAAFFDSRDVETINEMAAMARRMLISQRELQRDELLRLKMKYPHLTTKD
Ga0181361_10001221	F005775	N/A	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKNNAGKLDQVVTKELDTYTTHHLQNLLNTNEPR
Ga0181361_1000125	F004838	N/A	MITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTDLSGQIFSNAARHQNPSITNINENQFEVNEALLVETIAFYVLNAGGDTENFQRIYGSDTDIMFDLIIGNKRVMKDTPIFAAGSPFTFANTANFTAALGPNNLQFFAPRHQVFMEGAGILIPPQVQWSVQYTIFNVVSGAVVAPTASTQIGCYLFGTKVLLNFNTSI
Ga0181361_1000126	F002287	N/A	MASQPQKLAYVDGKLGAPTSGQQTTRILFNTIEAPGTTSTLVFFRNFQGLTSGQTNLTQNKLDSMESMIIKTISLYNYAPEGNLRNFGGAVQQTLSIIVGNQTVVKQLPIQFNQGTNGQAFDRLHENGGAEGQALGASDVLQNTLPCEIRLLTDIVIPPQVAFEVRIDSNSAAYTAAGAVTCVLSGYGKIFSAGNSF
Ga0181361_1000127	F000710	N/A	MISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSCTTSAAPQTITNGMQLRVSLTINNDVVIDDVVAHELGASTGTGISTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI