Scaffold Ga0181361_100011

Overview

Basic Information

• Taxon OID: 3300019783
• Scaffold ID: Ga0181361_100011
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9902
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F026828	Metagenome	196	Y
F030991	Metagenome / Metatranscriptome	183	N
F052978	Metagenome / Metatranscriptome	141	N
F094995	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1000111	F002287	N/A	MNQITKLGYVDNKLGAPNDGQQTTRILFNTIEAPGTTSTLVFFKNFQGLTNGQTNLTSNKLATMESMVIKTIMLTQFATDGTLQNFGNRKQQTVSIIVGNQTVVKNLPIQFNTGENGQAFDRLHTNAGATIGIFGANTPTKQIMMPIEIRLLTDIVIPPQVEFEVRV
Ga0181361_10001110	F008615	N/A	MNTPQTFGAKMFGRFIKKGWHISFTDSYQDRVCVIPPDRLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0181361_10001112	F026828	N/A	MITEELIFNAIAFLAGLVLKRPDFVQKIVSKLFAKKTK
Ga0181361_10001117	F030991	N/A	VVLKYLGCDKKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKDIVLKIYNRTYGVKT
Ga0181361_10001119	F011474	N/A	MKEKIDHLTHFDIVVKEELASCTSAEDMLIVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNANANYKAKELKDTRFPHLKIFR
Ga0181361_10001121	F052978	N/A	LVGLFYLHLPMSFSIPTQIEKDIVRGKATYQTFQTGIGGQTVIPVTPNSYIVIFGYDFSPAGGGLTETVERPVFNIEAIPTTISYFGTQQVSFYSANAFNPFIHHVPIQCTALNVLPGDDPSVIYQVDNTPIARQVYIISGSDVAVTVGLIRSLTLPGIVYEAIPVTPSTPGFMTYGGDTQTPGIQSTLSPIGAMTFTQPQINNYAQYGFAAPFPANAANQAFWIPNALTGLTEPSNFISTFAPDFDLNAACHYYLNVHYALYNRAIPEQLG
Ga0181361_10001122	F000710	N/A	MANGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIIFSVTTTAAPQTIINGTQLLVTLTINNDVVIDSVVAHDLGASAAGGITTGFPAFIPFPRALTGQDTIILRVTNSSGASQLLNATVYYKNEI
Ga0181361_1000116	F094995	N/A	MVLKEKYTTLQRTLDAMKTQIEDSLSFARNFVPRGETPRSLFTLLKQHTTYRHDPPGVELLQSMPTLMHNNFYGIPGAGDCDCFVIAAVSSCVVEKIPVRIVVVGNTRKNPTHVYCEVLDGGRWTAFDLCSPFYGETKKYRYLSRINVN