Scaffold Ga0181360_116746

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181360_116746

Scaffold Ga0181360_116746

Overview

Basic Information
Taxon OID	3300019781 Open in IMG/M
Scaffold ID	Ga0181360_116746 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	600
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034908	Metagenome	173	Y
F049426	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181360_1167461	F034908	AGGA	MKKFSVVIEVLMADDYKDMVEKWKVEPSDHVATILTETAREKGLVVKASVLETEHSLFDRQRKHADHLVQADAYNDLE
Ga0181360_1167462	F049426	AGGA	MKTKPIFKTGSSPSYKGYDREVYMSEYVTIPKARLRRLIITEVIAWGISAFILLVTLIR

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