NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181360_100160

Scaffold Ga0181360_100160


Overview

Basic Information
Taxon OID3300019781 Open in IMG/M
Scaffold IDGa0181360_100160 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3973
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012040Metagenome / Metatranscriptome284N
F015354Metagenome / Metatranscriptome255Y
F026825Metagenome / Metatranscriptome196N
F082111Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181360_1001602F012040N/ALTKNPSKQAKQDLLNLPEVNISAWQDEGQQAELAAIMRNPIIRMAIRIVSESIPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVFETAKEPEATFDKQY
Ga0181360_1001603F082111N/AMEEPLNSPVVSNNQTPEFGSSFIDAFKAIGADNAAPADKAVTPAPQKTDNTPPKLSKSEMDIERMFGSKKTAAEPASPAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPEFESQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERSSELTEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELSKYRGSEPGVTSKATSGGYRPANANASKSEDFVASVMKSLGR
Ga0181360_1001606F015354N/AMNPNIASLIRHVLTAAGGFIVAKGLASADQVTEIVGAIVSIFGVAWSIINNKKNASKTE
Ga0181360_1001607F026825N/AMTDHHAFIRDISIGVGGPAIGILGNAVFSDPNLKTVSLALGALAALLTCAVKAVELYRKFKNYK
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