Scaffold Ga0181360_100137

Overview

Basic Information

• Taxon OID: 3300019781
• Scaffold ID: Ga0181360_100137
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4091
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F037129	Metagenome / Metatranscriptome	168	Y
F077197	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181360_1001375	F077197	AGAAGG	MFLPVEFQDQDGPYFEHLNVTHITRISFINPRNPDAGARIHLRTGDVLSTKMPFDQLSQAIDEAWESAACLVLSTLLSEKAKLVPGNLRSEEKNQLPEEFEA
Ga0181360_1001378	F019119	GGA	MSIVEKIIKMDRAIRTEMEALSAKIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKHMGYINDVEIKNMIRMLESEDQDNLHMVTLSIKNFRNLRLQEHGEYSKVNKAYWSIAKNYANEILNHEIFMQTMAAK
Ga0181360_1001379	F037129	N/A	MNKKKDYKIVEVTHGFQTKYTVKKRVFWIFWKTVKNNAGFDVAYDTKRAAQSYINFLK